[Biojava-l] changed (improved) SequenceDB and stuff

[Matthew Pocock]

Thanks Gerald.

I have merge these changes in to CVS now. In retrospect, naming seqDBs is probably a
good thing. The only tweaks I made were:

a) HashSequenceDB now has a range of constructors, including a no-args variant
b) HashSequenceDB is now Serializable
c) org.biojava.bridge.Bioorba.Seqcore - PrimarySeqDBImpl & SeqDBImpl now use the propper
getName semantics, rather than magicing names from thin air.
d) updated the demos to work (the two corba servers)

Let me know if you are interested in read/write CVS access.
Great work

Matthew

Gerald Loeffler wrote:

> I made the following slight changes to SequenceDB and related classes
> and hope that you find them acceptable and hence check them into your
> CVS repository:
>
> o org.biojava.bio.seq.SequenceDB:
>         o added getName() method which returns the (possibly null) name of a
> sequence db
>

</snip>

> Though minor in nature, the addition of the getName() method to
> interface SequenceDB will result in all implementations (outside the
> BioJava distribution) of this interface to break in the sense that they
> will all have to add an implementation of the getName() method...
>
> cheers,
> gerald
> --
>    Gerald.Loeffler@vienna.at _________________ Software Architect
>    http://www.imp.univie.ac.at ____ http://www.daemonstration.com
>    OOA&D, Java, J2EE, JSP, Servlets, JavaBeans, ODBMS, RDBMS, XML