[Biojava-l] added code for sequence similarity searches to CVS repository

[Gerald Loeffler]

hi!

i just checked in code for the sequence similarity search object model
and a simple-minded (but at least for me sufficient) implementation of
some of these interfaces. What is notably missing is an implementation
of interface SeqSimilaritySearcher, i.e. of the actual searching
algorithm (-;

This was checked in:

org.biojava.bio.search.SeqSimilaritySearcher
org.biojava.bio.search.SeqSimilaritySearchHit
org.biojava.bio.search.SeqSimilaritySearchResult
org.biojava.bio.search.SeqSimilaritySearchSubHit
org.biojava.bio.search.SimpleSeqSimilaritySearchHit
org.biojava.bio.search.SimpleSeqSimilaritySearchResult
org.biojava.bio.search.SimpleSeqSimilaritySearchSubHit

	have a nice weekend,
	gerald

-- 
   Gerald.Loeffler@vienna.at _________________ Software Architect
   http://www.imp.univie.ac.at ____ http://www.daemonstration.com
   OOA&D, Java, J2EE, JSP, Servlets, JavaBeans, ODBMS, RDBMS, XML