[Biojava-l] Re: GFF & feature creation

[Kim Rutherford]

On Tue, 22 Feb 2000 09:04:12 GMT, Peter Rice wrote:

> Joins across sequences are a problem. For example, the following EMBL
> entry where all except one of the the exons (and flanking sequence)
> are in separate entries.

Also there is an occasional EMBL entry that has a join across both
strands in the same sequence:

ID   ECP15BG    standard; DNA; PRO; 8294 BP.
XX
AC   X62121;
XX
SV   X62121.1

...

FT   CDS             join(1023..2804,complement(3883..4383))
FT                   /db_xref="SPTREMBL:Q47429"
FT                   /note="DNA inversion product"
FT                   /transl_table=11
FT                   /gene="Sc/SvMr"
FT                   /protein_id="CAA44049.1"
FT   CDS             join(1023..2804,complement(4391..4897))
FT                   /db_xref="SPTREMBL:Q47430"
FT                   /note="DNA inversion product"
FT                   /transl_table=11
FT                   /gene="Sc/SvN"
FT                   /protein_id="CAA44050.1"

etc.