[Biojava-l] status? Blast parser?

[Matthew Pocock]

Jared,

We are currently pre-release, although all of the core code seems
relatively bug-free. There are still a small number of issues to be
resolved (e.g. how to stoore strandedness of features), but it is stable
enough to write small-ish programs. You can download a copy from
anonymous CVS by following the instructions at http://cvs.biojava.org

There is not yet a blast parser, but there realy should be one...

Matthew

Jared Nedzel wrote:

> Folks:
>
> It wasn't clear to me from the biojava web page, so
> you'll have to excuse my foolish questions.  First,
> what is the status of biojava?  It appears that it is
> still in development and has not been released yet.
> Is that correct?
>
> Also, I've looked through the javadoc for the API,
> but was unable to find a Blast parser (which I
> desperately need).  Is it in there, but I just missed
> yet?  Or if not, is it planned?
>
> If not, any other suggestions for a Java Blast parser?
> I'd rather not have to write my own.
>
> Thanks,
>
> Jared
> nedzel@mpi.com
>
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