[Biojava-l] sample code information is needed
Bruce Ling
xuefengl@doubletwist.com
Mon, 25 Dec 2000 23:11:29 -0800
This message is in MIME format. Since your mail reader does not understand
this format, some or all of this message may not be legible.
------_=_NextPart_001_01C06F0B.116AA8E0
Content-Type: text/plain;
charset="iso-8859-1"
Hi,
I am a new user for bio java. I have poked around the biojava code for a
while and obviously I need some help.
Is it possible that someone can provide some sample code for
1. parsing the blast file and HMMER output file
2. parsing and transformation of XML file.
One general comment: bioperl seems to have more functionality than biojava.
Has biojava thought about converting most of the bioperl functionality into
java?
Thanks.
Bruce Ling
------_=_NextPart_001_01C06F0B.116AA8E0
Content-Type: text/html;
charset="iso-8859-1"
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML><HEAD>
<META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=iso-8859-1">
<META content="MSHTML 5.00.2314.1000" name=GENERATOR></HEAD>
<BODY>
<DIV><FONT face=Arial size=2><SPAN
class=164211507-25122000>Hi,</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=164211507-25122000></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=164211507-25122000>I am a new user for
bio java. I have poked around the biojava code for a while and obviously I
need some help.</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=164211507-25122000></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=164211507-25122000>Is it possible that
someone can provide some sample code for </SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=164211507-25122000></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=164211507-25122000>1. parsing the blast
file and HMMER output file</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=164211507-25122000>2. parsing and
transformation of XML file.</SPAN></FONT></DIV>
<P><FONT face=Arial size=2><SPAN class=164211507-25122000>One general comment:
bioperl seems to have more functionality than biojava. Has biojava thought
about converting most of the bioperl functionality into java?</SPAN></FONT></P>
<P> <BR><FONT face=Arial>Thanks. </FONT></P>
<P><FONT face=Arial size=2><SPAN class=164211507-25122000>Bruce
Ling</SPAN></FONT></P>
<DIV> </DIV></BODY></HTML>
------_=_NextPart_001_01C06F0B.116AA8E0--