[Biojava-dev] [Biojava-l] BioJava 3.0.8 released

[Michael Heuer]

Nice work, Andreas.

Should I cut a new biojava-legacy release as well?  There aren't as many changes

https://github.com/biojava/biojava-legacy/compare/biojava-legacy-1.8.4...master

   michael


On Tue, Mar 25, 2014 at 5:34 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
> == BioJava 3.0.8 released ==
>
> BioJava 3.0.8 was released on March 25th 2014 and is available from
> http://biojava.org/wiki/BioJava:Download as well as from the
> BioJava maven repository at http://www.biojava.org/download/maven/
>
> This release would not have been possible without contributions from
> 13 developers, thanks to all for their support!
>
> BioJava 3.0.8 includes a lot of new features as well as numerous bug fixes
> and improvements.
>
> New Features:
>
>  - new Genbank writer
>  - new parser for Karyotype file from UCSC
>  - new parser for Gene locations from UCSC
>  - new parser for Gene names file from genenames.org
>  - new module for Cox regression code for survival analysis
>  - new calculation of accessible surface area (ASA)
>  - new module for parsing .OBO files (ontologies)
>  - improved representation of SCOP and Berkeley-SCOP classifications
>
> For a detailed comparison see here:
> https://github.com/biojava/biojava/compare/biojava-3.0.7...biojava-3.0.8
>
> For the next release we are planning some refactoring and removal of code
> that has been deprecated for a long time. As such the next release will be
> named 3.1.0.
>
> About BioJava:
>
> BioJava is a mature open-source project that provides a framework for
> processing of biological data. BioJava contains powerful analysis and
> statistical routines, tools for parsing common file formats, and
> packages for manipulating sequences and 3D structures. It enables
> rapid bioinformatics application development in the Java programming
> language.
>
> Happy BioJava-ing,
>
> Andreas
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