[Biojava-dev] Cloning repositories in eclipse

Amr AL-HOSSARY amr_alhossary at hotmail.com
Wed Apr 10 23:55:37 UTC 2013


I use eclipse too, but I haven't migrated yet.
I prefere development, but if it would make migration a hell, then I don't
mind changing the name.
Could there be something like an alias that links master to devel ?

Amr 

-----Original Message-----
From: biojava-dev-bounces at lists.open-bio.org
[mailto:biojava-dev-bounces at lists.open-bio.org] On Behalf Of Andreas Prlic
Sent: Thursday, April 11, 2013 7:24 AM
To: Steve Darnell
Cc: biojava-dev
Subject: Re: [Biojava-dev] Cloning repositories in eclipse

Same here, I got my eclipse setup to work with egit, but I thought that it
was not as easy as I would have hoped.   Let's try to keep the entry
barrier as low as possible.

This leaves the question: should we rename the devel or release branch to
master? I'd say devel, since by default this would give you the latest code
(similar to trunk checkouts in svn)

Andreas



On Wed, Apr 10, 2013 at 4:08 PM, Steve Darnell <darnells at dnastar.com> wrote:

> Eclipse user here. +1 for making BioJava easier to setup in Eclipse.
>
> ~Steve
>
> -----Original Message-----
> From: biojava-dev-bounces at lists.open-bio.org [mailto:
> biojava-dev-bounces at lists.open-bio.org] On Behalf Of Spencer Bliven
> Sent: Wednesday, April 10, 2013 5:57 PM
> To: biojava-dev
> Subject: [Biojava-dev] Cloning repositories in eclipse
>
> When I first drafted the instructions for cloning biojava in eclipse< 
> http://biojava.org/wiki/BioJava3_eclipse>,
> I was frustrated that the simple 'Checkout Maven projects from SCM'
> doesn't work with our layout. The alternate checkout method is about 4 
> times as long and much less intuitive.
>
> I had some time to debug the problem today, and it seems that the 
> e2m-egit connector doesn't handle branches. It fails with a misleading 
> message on any repository without a master branch. I've submitted a 
> bug report, but I'm not optimistic about it getting patched quickly.
>
> What proportion of BioJava users are using eclipse? Would fixing this 
> be worth renaming one of the branches to master?
>
> -Spencer
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--
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank University of California, San
Diego
(+1) 858.246.0526
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