[Biojava-dev] ncbi taxonomy: trees and api

Scooter Willis HWillis at scripps.edu
Tue Jan 17 16:53:52 UTC 2012


The forester.jar file used in the following package will give you the best
API to work with. http://www.phylosoft.org/archaeopteryx/

On 1/17/12 8:11 AM, "Ido Tamir" <tamir at imp.ac.at> wrote:

>Hi,
>I downloaded some files from ftp://ftp.ncbi.nih.gov/pub/taxonomy/
>
>I would like to work a little bit with data that I have e.g. genbank
>identifiers
>and how they map into the tree.
>
>Does anybody know parsers, APIs etc for these files? At
>the moment I don't care which language java would be preferred of course.
>
>thank you very much,
>ido
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