[Biojava-dev] [Biojava-l] FASTA Header Parser

[Hannes Brandstätter-Müller]

On Wed, Jan 11, 2012 at 22:34, Michael Heuer <heuermh at gmail.com> wrote:
> Hannes Brandstätter-Müller wrote:
>> On Wed, Jan 11, 2012 at 16:24, Scooter Willis <HWillis at scripps.edu> wrote:
>>> Is this a custom header or something output from a sequencing
>>> instrument/software?
>>
>> It's the output of the Roche/454 Titanium FLX Sequencer
>
> If you would rather, biojava has support for the FASTQ file format,

we already had this discussion this or last month. FASTQ support is
still not in 3.0, only in 1.8. I will work on porting that to 3.0 and
supporting FASTA/QUAL too, most likely, but I will have time for that
starting in April, after this project that I'm working on currently is
finished.

Hannes