[Biojava-dev] starting to prepare next BioJava release

[Andreas Prlic]

Hi,

I added some parts of an off-line discussion I had with Scooter here:

http://biojava.org/wiki/Algorithm_Java_port

if anybody wants to suggest algorithms for porting to Java, feel free
to add there...

Andreas


On Tue, Feb 7, 2012 at 3:59 PM, Thornton Robert
<robert.thornton at gmail.com> wrote:
>
> I'm interested in this effort.  This would be a great way to grow my knowledge of bioinformatics.  We should be able to use unit tests to ensure we're preserving the semantics of the algorithms during the port.
>
> Regards,
> Rob
>
>
> On  7  Feb 2012, at 13:43, Andreas Prlic wrote:
>
>> Hi Scooter,
>>
>> good idea, what about setting up a wiki page and collecting a list of
>> possible algorithms for Java porting?
>>
>> Andreas
>>
>>
>>
>> On Tue, Feb 7, 2012 at 4:16 AM, Scooter Willis <HWillis at scripps.edu> wrote:
>>> Andreas
>>>
>>> It would be good to allocate a project for porting and could be a great
>>> way to introduce an individual with solid computational background but
>>> limited bioinformatics to the group.
>>>
>>> Scooter
>>>
>>> On 2/7/12 2:08 AM, "Andreas Prlic" <andreas at sdsc.edu> wrote:
>>>
>>>> Hi,
>>>>
>>>> I would like to start preparing another BioJava release (3.0.3) -
>>>>
>>>> the main new features of this release will be
>>>>
>>>> - significant improvements to the web service module (ncbi blast and
>>>> hmmer web services)
>>>> - "new" fastq parser (ported from the biojava 1 series to version 3),
>>>> - as well as numerous improvements all over the place.
>>>> - (did I miss any other major recent commits?)
>>>>
>>>> Prior to release would be great to add more documentation. Any
>>>> volunteers to bring the documentation for (some of) the new features
>>>> up to date and polish the existing docu?
>>>>
>>>> Andreas
>>>> _______________________________________________
>>>> biojava-dev mailing list
>>>> biojava-dev at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>>>
>>
>>
>>
>> --
>> -----------------------------------------------------------------------
>> Dr. Andreas Prlic
>> Senior Scientist, RCSB PDB Protein Data Bank
>> University of California, San Diego
>> (+1) 858.246.0526
>> -----------------------------------------------------------------------
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>> biojava-dev at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>
>
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