[Biojava-dev] GFF3Reader modification

[Carmelo Foti]

Hi Ryan,

I made some changes in the GFF3Reader class, but I had internet issues and
I could not commit the patch.
I think it would be better for you to start from the updated version, which
is a lot faster when using the entire hg19 gtf.
I'll send you the files as soon as possible

Regards,
Carmelo Foti

2012/8/22 Ryan Golhar <ngsbioinformatics at gmail.com>

> Hi all - I'm using the GFF3Reader right now to read in the hg19 GTF file
> from UCSC.  In debugging my own application, loading the GTF file take a
> little bit of time. I'd like to make a modification to read each line on
> demand instead of all at once.  Is this something others would find useful?
>  If so, I'll submit a patch with my change.
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>



-- 
Carmelo Foti
Research assistant
Politecnico di Torino
Dipartimento di Automatica e Informatica - EDA Group
C.so Duca degli Abruzzi 24, 10129 Torino (ITALY)
Phone: (+39) 011 090 7072
Fax: (+39) 011 090 7099
E-mail: carmelo.foti at polito.it