[Biojava-dev] BioJava3 Sequence/AlignedSequence serialization

[Scooter Willis]

Chris

No reason just didnt make it as a test case. We have the notion of a proxy sequence for remote storage of data so would be interesting as a serialized object because we wont control the internal storage of objects. Will see what I can do in the next couple of days.

Thanks

Scooter

----- Reply message -----
From: "Chris Friedline" <cfriedline at vcu.edu>
Date: Sun, Oct 24, 2010 11:12 am
Subject: [Biojava-dev] BioJava3 Sequence/AlignedSequence serialization
To: "biojava-dev at lists.open-bio.org" <biojava-dev at lists.open-bio.org>

Hello,

Was wondering why these objects are not serializable?  I'm probably
not the only person doing this, but I continually use a large matrix
of protein pairwise alignments in my work here.  It would be great to
simply serialize our the BioJava objects rather than have to extract
from and store alignment properties (sequences, start/end, mappings
between protein position and alignment position, etc) for use later.
Was there a specific reason not to do this?

Thanks,
Chris

--
PhD Candidate, Integrative Life Sciences
Virginia Commonwealth University
Richmond, VA
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