[Biojava-dev] Parsing PfamScan results

[Andreas Prlic]

sure, just  post the code here, we can do a review...

Andreas

On Sun, May 2, 2010 at 9:59 PM, Radwen Aniba <aradwen at gmail.com> wrote:

> Hi Anreas,
>
> Yes I've parsed Biojava API looking for something like that but started to
> write my own parser in Java, may be if someone could need it I can write a
> message with a code here.
>
> Thx anyway
>
> Rad
>
> 2010/5/3 Andreas Prlic <andreas at sdsc.edu>
>
> Hi Radwen,
>>
>> So far there is no PfamScan parser in BioJava....
>>
>> Andreas
>>
>> On Sat, May 1, 2010 at 2:42 AM, Radwen Aniba <aradwen at gmail.com> wrote:
>>
>>> Hi everyone,
>>>
>>> Do anyone already tried to implement a method to parse PfamScan outputs ?
>>> That's not too hard to do but I'm planning to write it in Java, but
>>> before I
>>> ignore if this is possible with Biojava or if someone already did
>>> somthing
>>> in that sense, it would be helpful.
>>>
>>> Regards
>>>
>>> Radwen
>>>
>>> --
>>> R. ANIBA
>>> _______________________________________________
>>> biojava-dev mailing list
>>> biojava-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>>>
>>
>>
>>
>> --
>> -----------------------------------------------------------------------
>> Dr. Andreas Prlic
>> Senior Scientist, RCSB PDB Protein Data Bank
>> University of California, San Diego
>> (+1) 858.246.0526
>> -----------------------------------------------------------------------
>>
>
>
>
> --
> R. ANIBA
>
> Bioinformatics PhD
> Laboratoire de Bioinformatique et Génomique Intégratives,
> Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC),
> 1 rue Laurent Fries,
> 67404 Illkirch, France.
> http://www-igbmc.u-strasbg.fr
> http://alnitak.u-strasbg.fr/~aniba/alexsys<http://alnitak.u-strasbg.fr/%7Eaniba/alexsys>
>



-- 
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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