[Biojava-dev] [Bug 2541] New: Exception is thrown when trying to parse a valid GenBank file

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2541

           Summary: Exception is thrown when trying to parse a valid GenBank
                    file
           Product: BioJava
           Version: 1.5
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: seq.io
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: martin.jones at ed.ac.uk


org.biojava.bio.BioException: Could not read sequence
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:113)
        at
readgbtest.GenBankReader$GenBankSequenceReader.processRecord(GenBankReader.java:333)
        at
readgbtest.GenBankReader$GenBankSequenceReader.run(GenBankReader.java:416)
Caused by: org.biojava.bio.seq.io.ParseException: 

A Exception Has Occurred During Parsing. 
Please submit the details that follow to biojava-l at biojava.org or post a bug
report to http://bugzilla.open-bio.org/ 

Format_object=org.biojavax.bio.seq.io.GenbankFormat
Accession=AB000109
Id=4958873
Comments=Section key was null
Parse_block=null   
Stack trace follows ....


        at
org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:289)
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110)
        ... 2 more


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