[Biojava-dev] Error while reading byte data for creating a Trace.

[Andy Yates]

Oh for ... :). Thought I'd seen this one before

Andy

On 7 Jan 2008, at 12:01, Richard Holland wrote:

> This problem was resolved back in November. For some reason during the
> last couple of weeks the BioJava mailing list has been sending out
> occasional duplicate copies of emails sent several months ago! This  
> was
> one of them.
>
> cheers,
> Richard
>
> On Mon, January 7, 2008 9:34 am, Andy Yates wrote:
>> Hi,
>>
>> As far as I am aware there isn't a problem with the current ABI  
>> parser
>> however if you could send a code snippit of reading in the byte array
>> & the stack trace of the index out of bounds exception that would be
>> most helpful
>>
>> Andy
>>
>> On 5 Nov 2007, at 17:59, abhi232 at cc.gatech.edu wrote:
>>
>>> Hi all,
>>> I am having a byte array which is having the data from an .ab1
>>> file.The
>>> biojava library provides a class called as ABITrace which takes as
>>> input
>>> either a byte[] array , a file or a url.If i use the later
>>> parameters (the
>>> file or the url )the program works but if I pass the byte array to  
>>> the
>>> constructor I get java.lang.arrayIndexOutOfBound.Exception.Is  
>>> there a
>>> problem with the ABITrace class or how can I bypass this particular
>>> error.
>>> I am printing the length of the byte array and it comes to
>>> 144930...Can
>>> that cause a problem in my code?
>>>
>>> Thanks in advance.
>>> Abhinav
>>> _______________________________________________
>>> biojava-dev mailing list
>>> biojava-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>>
>> _______________________________________________
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>> biojava-dev at lists.open-bio.org
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>>
>
>
> -- 
> Richard Holland
> BioMart (http://www.biomart.org/)
> EMBL-EBI
> Hinxton, Cambridgeshire CB10 1SD, UK