[Biojava-dev] [Bug 2244] uniprot files do not load

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2244





------- Comment #5 from holland at ebi.ac.uk  2007-03-22 08:19 EST -------
I have investigated the two problem DR lines and found that they do not match
the current UniProt file format specifications as defined at
http://www.expasy.org/sprot/userman.html#DR_line .

There is no indication in the UniProt file format specification as to what a DR
line in this format might actually mean.

As these files came from UniProt themselves, I think the best thing to do is
for you to contact UniProt and raise a bug report with them directly indicating
that their website is producing files that do not conform to their own file
format standards.

BJX can only parse files which follow the official format definition. There's
only so much flexibility we can build in! :)

I'll leave this bug as ASSIGNED for now so that you can add any comments
regarding what UniProt say about their bug.


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