[Biojava-dev] tandem repeats in biojava

[Joel Pitt]

Hi zbhuang,

When I last checked about a couple of years ago there wasn't anything
like that as part of the core biojava. I'm the author of
http://repeatfinder.sourceforge.net/ which is an approximate
tandem/exact repeatfinder using our own searching algorithm. I was
planning to port it into biojava (as well as build a nice GUI for it),
but as is usually the case, I haven't had the time.

The RepeatFinder source code is available though, so feel free to port
it yourself ;)

Cheers,
Joel

On 3/15/07, Huang Zhibin <zbhuang2005 at hotmail.com> wrote:
> Hi,
>  I just wonder whether biojava implements the function of exact/approximate
> tandem repeats in DNA. I thought it is a typical function of dna, but I
> could not find anything about it in biojava.
>  Hope someone can give me some hints. Thanks
> Best,
> zbhuang
>
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-- 
-Joel

"Unless you try to do something beyond what you have mastered, you
will never grow." -C.R. Lawton