[Biojava-dev] [Bug 2260] Bug in UkkonenSuffixTree

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2260


holland at ebi.ac.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #1 from holland at ebi.ac.uk  2007-06-25 08:35 EST -------
Fixed now in CVS on the head. Problem was quite simple - the loop that iterated
over portions of a multiple string was identifying the end of each portion but
lumping in the whole of the preceding portions with each one. Net effect was
this:

Input:  aaa$bbb$ccc
Sequences: aaa, aaa$bbb, aaa$bbb$ccc

The corrected behaviour is this:

Input: aaa$bbb$ccc
Sequences: aaa, bbb, ccc


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