[Biojava-dev] [Bug 2177] New: Unclosed streams in org.biojava.bio.program.scf.SCF

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2177

           Summary: Unclosed streams in org.biojava.bio.program.scf.SCF
           Product: BioJava
           Version: 1.4
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: major
          Priority: P2
         Component: bio
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: keiranmraine at gmail.com


Hi,

There are problems in the following methods where the input streams have not
been closed.  This can cause a 'too many open files' os error when working
rapidly over large data sets.

org.biojava.bio.program.scf.SCF.load(File f)
- FileInputStream fin;

org.biojava.bio.program.scf.SCF.ParserFactory.parse(InputStream in, SCF out,
long initOffset)
 - DataInputStream din


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