[Biojava-dev] biojavax stress test

[mark.schreiber at novartis.com]

Hi Michael -

Everything that can be configured with the Hibernate config.xml can be 
configured programatically with the hibernate API (or even XDoclet 
apparently!!).

The best guide is the Hibernate reference 
(http://www.hibernate.org/hib_docs/v3/reference/en/html/session-configuration.html#configuration-programmatic) 
which has examples.

A HSQL Junit test for the hibernate mappings would be excellent!

- Mark





Michael Heuer <heuermh at acm.org>
Sent by: biojava-dev-bounces at portal.open-bio.org
01/12/2006 12:52 PM

 
        To:     biojava-dev at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] biojavax stress test


Mark Schreiber wrote:

> Right now we need people to stress test the new biojavax packages
> available in CVS. Some more Unit tests for biojavax would also be great.
> Especially ones that test for cases identified in stress testing.

Hello Mark,

Along these lines I tried to put together a functional test setup for the
biojavax packages, but ran into a bit of a problem.  I'd like to:

 - create an in-memory database and connection using HSQLDB

 - load the biosql DDL into the in-memory database using straight jdbc

 - load the hibernate mappings and create a hibernate session

 - load the taxon files into the database, using hibernate

 - load a handful of sequences from flat files into the database

 - run tests on the sequences pulled from the database (or the cache, as
it may be)

Unfortunately I'm stuck at the hibernate config part -- does anyone know
how to load the mappings and create a session from an existing Connection?

The Hibernate config works fine from a config file and an external
database, but I would really like to do everything in code, so that it
can be used in a set up method for tests.

   michael

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