[Biojava-dev] Re: [Biojava-l] biojava and microArray:::::::::Proget

[David Nix]

I'd be willing to contribute/ modify all of my code for processing,
normalizing, and analyzing Affymetrix's tiling genomic microarrays
http://rana.lbl.gov/~nix/TiMAT/ .  These are similar to expression arrays
but are gaining acceptance as a means of identifying every sequence in a
complex pool of probes, ie ChIP-Chip experiments. -Nix


David Austin Nix, PhD
Department of Genome Sciences
Lawrence Berkeley National Laboratory
Mailstop 84R0171
One Cyclotron Road
Berkeley, CA  94720-3200

(lab) 510-486-6791
(fax) 786-549-0137
(AIM) livenix
(email) danix at lbl.gov

http://rana.lbl.gov/~nix


On 11/29/04 10:37 AM, "Michael Heuer" <heuermh at acm.org> wrote:

> 
> I'm willing to coordinate efforts to bring gene expression support to
> biojava.  However, I don't think it should be done without proper support
> for MAGE and the MAGE Ontology, out of respect to those active standards
> communities.
> 
> I've set up a wiki to discuss a biojava-expr library at
> 
>> http://hume.ccgb.umn.edu:8668/space/BiojavaExpr
> 
> Feel free to register to create an account, then edit that page or create
> new ones linked from that page with your design considerations,
> implementation ideas, or feature requirements.
> 
> Alternatively, I feel that the biojava developers mailing list is the most
> appropriate venue for this kind of discussion, and would recommend that
> anyone interested in contributing to a biojava-expr library subscribe to
> and post there.
> 
>>  http://www.biojava.org/mailman/listinfo/biojava-dev
> 
>  michael
> 
> 
> On Fri, 26 Nov 2004, gregory voisin wrote:
> 
>> hie, biojavatien and microarrayers,
>> 
>> I'm trying to developping some  Java Classe to manipulate Expression data....
>> in fact , these classes are adapted for my use hence, for this moment, more
>> specificly .....
>> 
>> i ' m not a  informatics developpers... just a poor bioinformatist but
>> i would like initiate this project ( which is a very too big fish for
>> me) and work with severals brains to develop a new simple package for
>> BioJava......
>> 
>> thanks for your time and your energy....
>> 
>> que le vent gonfle vos voiles et que le soleil inonde vos visages
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> VOISIN greg.
>> Bioinformaticien.
>> Centre de recherche du CHUM.
>> MONTREAL
>> 
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> 
> 
> 
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