[Biojava-dev] Re: biosql

[Matthew Pocock]

Scratch that - a clean rebuild seems to have fixed it. I am getting a 
single failure though:

Testcase: testFeaturePersistence took 0.843 sec
    FAILED
[feature] location is now an instance of: 
org.biojava.bio.symbol.RangeLocation
junit.framework.AssertionFailedError: [feature] location is now an 
instance of: org.biojava.bio.symbol.RangeLocation
    at 
org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest.testFeaturePersistence(BioSQLSequenceDBTest.java:236)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
    at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

Thomas - is this test beeing run by the nightlies?

Matthew Pocock wrote:

> Hi,
>
> I'm having problems running the biosql tests. I think it boils down to 
> the biosql test not finding the resources containing the database 
> intialisation sql commands. Could someone who understands this test 
> check out todays biojava, and take a guess as to what is going wrong?
>
> Matthew
>
> ps I have been hacking the test and build.xml files arround, but in my 
> defence, they were not working for me to begin with
>