[Biojava-dev] I can't create SimpleSequences any more since I upgraded to the latest CVS version!

[Matthew Pocock]

Make sure that grammars.jar is explicitly listed in your classpath, or 
is in the same directory as biojava.jar

Benjamin Schuster-Boeckler wrote:

> The following code leads to a strange exception:
>
> ------------------------ snip --------------------------
> Feature.Template template = new Feature.Template();
>        template.type = "empty";
>        template.source = "MyProgram.ContigSequence";
>        template.annotation = new org.biojava.bio.SimpleAnnotation();
>        template.location = LocationTools.makeLocation(1, 100000);
>        return new org.biojava.bio.seq.impl.SimpleFeature(this, this, 
> template);
> ------------------------ snap --------------------------
>
> =>
>
> ------------------------ snip --------------------------
> java.lang.NoClassDefFoundError: 
> org/biojava/ontology/format/triples/node/Node
>        at org.biojava.ontology.OntoTools.<clinit>(OntoTools.java:71)
>        at 
> org.biojava.bio.seq.impl.SimpleFeature.<init>(SimpleFeature.java:386)
>        at 
> com.biomax.pedant3.das.ContigSequence.filter(ContigSequence.java:140)
>        at 
> org.biojava.servlets.dazzle.DazzleServlet.featuresOutput_dasgff(Unknown 
> Source)
>        at 
> org.biojava.servlets.dazzle.DazzleServlet.featuresCommand(Unknown Source)
>        at org.biojava.servlets.dazzle.DazzleServlet.doGet(Unknown Source)
> ------------------------ snap --------------------------
>
> How did that happen?
>
> Greetings,
>
> Benjamin
>
>
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