[Biojava-dev] [biojava-builder] BioJava nightly build report

[Thomas Down]

On 27 Feb 2004, at 05:12, autobuilder at derkholm.net wrote:

> BioJava automatic build system, run 20040227
>
> Binary build: OK
> Javadocs build: OK
> Core test suite: NOT RUN

Hi,

This means that the test suite won't compile (I'll see if I can get the  
script to generate a more informative message for this at some point  
:-).  The main problem seems to be that RepeatedCharSequenceTest.java  
has been checked in, but the corresponding RepeatedCharSequence is  
missing.  Matthew, can you check this in ASAP?

There's a second, apparently unrelated problem of BioSQLSequenceDBTest  
calling a non-existant method on OntologySQL.  I'm not sure what's  
going on here.  Do we really need to have test cases calling non-public  
API like OntologySQL?

     Thomas

> Problems occurred during this build cycle -- please investigate as  
> soon as possible!
>
> The following files were modified in the last 24 hours:
>
>   *  
> biojava-live/src/org/biojava/bio/seq/projection/ProjectionEngine.java
>   * biojava-live/src/org/biojava/bio/symbol/AbstractSymbol.java
>   * biojava-live/tests/org/biojava/bio/seq/impl/ViewSequenceTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/AbstractSymbolEventTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/AlphabetManagerTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> AlphabetSerializationTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/BetweenLocationTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/CircularLocationTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/CodonPrefToolsTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/CompoundLocationTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> CrossProductAlphabetIndexTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> CrossProductTokenizationTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> FundamentalAtomicSymbolEventTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/GappedSymbolListTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/MergeLocationTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/MotifToolsTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/NameTokenizationTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/PackedDnaSymbolListTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> SimpleAtomicSymbolEventTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> SimpleBasisSymbolEventTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/SimpleCodonPrefTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/SimpleSymbolEventTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/SimpleSymbolListTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/ 
> SimpleWobbleDistributionTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/SymbolListTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/SymbolSerializationTest.java
>   * biojava-live/tests/org/biojava/bio/symbol/SymbolUtils.java
>   * biojava-live/tests/org/biojava/bio/symbol/TranslationTest.java
>   *  
> biojava-live/tests/org/biojava/bio/symbol/UkkonenSuffixTreeTest.java
>   * biojava-live/tests/org/biojava/utils/RepeatedCharSequenceTest.java
>
> A patch file reflecting these changes is available from
>
>       http://www.derkholm.net/autobuild/patches/
>
> -- 
> BioJava Autobuilder, maintained by Thomas Down
> If you notice any problems, contact autobuilder at derkholm.net
>
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