[Biojava-dev] BioJava compatibility with BioSQL-ORA?

[mark.schreiber at group.novartis.com]

Hi -

The biojava 1.3.x series is only compatable with an older version of the 
BioSQL schema (known as the 'Capetown schema') For the most up to date 
support you should get a version of biojava-live from CVS or from the 
autobuild distribution.

- Mark

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910





Michael Griffith <mg at guerrilla-tech.com>
Sent by: biojava-dev-bounces at portal.open-bio.org
04/22/2004 11:41 PM

 
        To:     <biojava-dev at biojava.org>
        cc: 
        Subject:        [Biojava-dev] BioJava compatibility with BioSQL-ORA?


Hello, 

I am unclear after looking the current documentation and website if the
classes in org.biojava.bio.seq.db.biosql.* are compatible with the
BioSQL-Oracle implementation located at
http://cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/sql/biosql
-ora/?cvsroot=biosql.

If I understand the Javadoc's, the only supported DB's for these classes 
are
mySQL and PostgreSQL?

I am currently using the 1.3.1 Version of BioJava.

Any help would be appreciated!

Michael Griffith

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