[Biojava-dev] DNATools.forSymbol

[Schreiber, Mark]

Hi -

There is no good reason other than it is a weakly observed convention to
use lower case letters for DNA and RNA and upper case for Protein. I
have changed the methods in DNA and RNA tools to be case insensitive. I
have commited the changes to biojava-live.

- Mark


> -----Original Message-----
> From: Rhett Sutphin [mailto:rhett-sutphin at uiowa.edu] 
> Sent: Friday, 14 March 2003 10:44 a.m.
> To: biojava-dev at biojava.org
> Subject: [Biojava-dev] DNATools.forSymbol
> 
> 
> Hi,
> 
> I have what might be a stupid question:  why isn't 
> DNATools.forSymbol(c) the same as 
> DNATools.createDNA(Character.toString(c)).symbolAt(1) for all c?  
> forSymbol only works for lowercase a, c, g, and t, while createDNA 
> handles uppercase and lowercase of the whole DNA alphabet, 
> plus gaps.  
> Is there a special meaning/use of forSymbol that warrants this 
> difference in behavior?
> 
> Just curious,
> Rhett
> 
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> 
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