[Biojava-dev] Fresh checkout from CVS problem

[Simon Foote]

Hi Thomas,

You right it did clear spontaneously. I just tried it again and it all 
worked fine.

Now I can get down to adding the updated BioSQL files.  I've added a 
note to the main BioSQLSequenceDB file to indicate that it now only 
supports the post Singapore (soon to be version 1.0) of the schema.
I will also add a check similar to your pre-Cape town test to verify 
that the correct schema is being used.

Regards,
Simon

Thomas Down wrote:

>Once upon a time, Simon Foote wrote:
>  
>
>>And it runs the entire repository downloading it correctly until it hits 
>>the what I assume is the last file in the repository and then it hangs, 
>>only a Ctrl-c will get me out of it.  The last few lines are:
>>
>>cvs server: Updating biojava-live/tests/org/biojava/utils
>>U biojava-live/tests/org/biojava/utils/ListToolsTest.java
>>cvs server: Updating biojava-live/tests/org/biojava/utils/lsid
>>U biojava-live/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java
>>cvs server: Updating biojava-live/tests-1.4
>>cvs server: Updating biojava-live/tests-1.4/org
>>cvs server: Updating biojava-live/tests-1.4/org/biojava
>>cvs server: Updating biojava-live/tests-1.4/org/biojava/bio
>>cvs server: Updating biojava-live/tests-1.4/org/biojava/bio/molbio
>>cvs server: Updating biojava-live/tests-1.4/org/biojava/utils
>>cvs server: Updating biojava-live/tests-1.4/org/biojava/utils/lsid  <--- 
>>Hanging on this line
>>    
>>
>
>I think that's right at the end of the checkout, so unless
>I'm mistaken, killing the checkout with ctrl-C should give
>you a complete tree which builds okay.
>
>I saw a similar problem last week.  It cleared spontaneously.
>Unless it's actively causing problems for you, I'd just put
>it down as one of those deep, dark, mysteries of CVS...
>
>    Thomas (roll on Subversion :-).
>  
>

-- 
Bioinformatics Specialist
Institute for Biological Sciences
National Research Council of Canada
[T] 613-990-0561  [F] 613-952-9092
simon.foote at nrc-cnrc.gc.ca