[Biojava-dev] The great deprecation clean up

[Matthew Pocock]

I can't express how much I apreciate somebody (anybody) else sorting 
this out. Thanks.

Matthew


Schreiber, Mark wrote:
> Hi -
> 
> After the recent change in the way BioError and BioRuntimeException are
> constructed observant biojavaites would have noticed that there were
> several hundred deprecation warnings during a compile of the source
> code. In a fit of insanity never to be repeated I have cleaned all of
> these up. 
> 
> On the upside I got to look at parts of BioJava that haven't seen the
> light of day for a long time, bits I never new where there (if only I'd
> known about NucleotideTools a month ago!!) and bits that should never be
> seen by either man or beast!
> 
> On the downside your next checkout from CVS might be a little heavy
> weight (anyone like to guess how many classes can throw a BioError or
> BioRuntimeException??).
> 
> There are now a respectable 21 deprecation warnings for BioJava-live, I
> leave these as an exercise for the interested reader :)
> 
> - Mark
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