[Biojava-dev] CrossProductAlphabet index breaking Serialization

Matthew Pocock matthew_pocock at yahoo.co.uk
Tue Jan 28 10:37:52 EST 2003


Test passes for me now. In CVS. Could you check it works for you?

Kalle Näslund wrote:
> Schreiber, Mark wrote:
> 
>> Hi -
>>
>> The recent changes to Alphabet indexing are breaking the serialization
>> of crossproduct alphabets like the phred alphabet. Specifically, in line
>> 131 of the AlphabetSerializationTest.
>>
>> It used to work really well! Can someone fix this or roll back the
>> changes please?
>>
>>  
>>
> Hi!
> 
> I might be the culprit responsible for this :/ I recently commited a 
> class called
> CrossProductAlphabetIndex, but, i havent touched any other code at all. 
> So i am
> a bit baffled on how this resulted in serialization breaking for other 
> classes. You got
> any clues on how me adding a single class, with no changes whatsoever to 
> other code
> might result in this ?
> 
> I wil try to figure this out tommorow though.
> 
> hope i didnt cause to much trouble
> 
> mvh Kalle
> 
> 
> 
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