[Biojava-dev] GFF/GTF output format.

Len Trigg len at reeltwo.com
Mon Dec 1 21:04:16 EST 2003


Hi guys,

I'm writing GFF files for use with Eval
(http://genes.cs.wustl.edu/~bio/eval/main.html). It comes with a GTF
validator, which threw up a couple of warnings about the GFF produced
by our GFFWriter. They expect the attributes section to contain a
trailing semicolon, and are a bit pickier about when text attribute
values are quoted. If no-one has any objections, I'll fix this so the
output validates (if you've got your own parsers that depend on the
current behaviour, they could conceivably break).


Cheers,
Len.


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