[Biocorba-l] SeqFeature -> get_Primary_Seq

[Alan Robinson]

I've taken it to be the former (although for my implementation against the
EMBL database I chose to throw an exception since it's optional).

Note there is a get_PrimarySeq method in the Seq object which gives the
other functionality.



Btw, the version number of a database - should it be a 'string' or an
'integer'??? Currently, it's the latter - But I'm now not so sure if
that's appropriate...



--
============================================================
Alan J. Robinson, D.Phil.             Tel:+44-(0)1223 494444
European Bioinformatics Institute     Fax:+44-(0)1223 494468
EMBL Outstation - Hinxton             Email:  alan@ebi.ac.uk
Wellcome Trust Genome Campus
Hinxton, Cambridge
CB10 1SD, UK                http://industry.ebi.ac.uk/~alan/
============================================================

On Tue, 6 Feb 2001, Jason Stajich wrote:

> In the IDL for the object SeqFeature, the method get_Primary_seq I have
> the follow question.
> 
> Is the intention to return the PrimarySeq that is bounded by the
> start/end of the SeqFeature (as we do in bioperl) or the entire PrimarySeq
> that the Feature lies on?
> 
> Thanks.
> Jason Stajich
> jason@chg.mc.duke.edu
> Center for Human Genetics
> Duke University Medical Center 
> http://www.chg.duke.edu/ 
> 
> 
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