[MOBY-l] Problems starting dashboard in trunk

[Ola Spjuth]

Hi Andreas,

Sorry, I should have clarified this:

I have apples JVM1.5.0 installed at /System/Library/Frameworks/ 
JavaVM.framework/Versions/1.5.0 with the following structure:

Classes
Commands
Headers
Home
	bin
	lib
Libraries
Resources

The JRE container in Eclipse points to /System/Library/Frameworks/ 
JavaVM.framework/Versions/1.5.0/Home, and setting is to not use  
deprecated JRE_LIB. I have set the JAVA_HOME in Eclipse and in bash  
to this as well, so that should not be a problem (don't know why that  
wasn't picked up by ant). Anyway, I can build jmoby, moses datatypes,  
run sample clients, but not dashboard. I do see commons- 
collections-2.1.jar under Maven dependencies in Eclipse.

Cheers,

/Ola

On Mar 27, 2008, at 16:28 , Andreas Groscurth wrote:

> Hi Ola,
>
> the current docs (http://biomoby.open-bio.org/CVS_CONTENT/moby-live/ 
> Java/docs/EclipseAndJMoby.html) do not suggest to edit any build  
> files... and the 'Home' makes me wondering - what Java installation  
> is that ? never seen a Java installation that has a 'Home'  
> directory inside ?!
>
> which Java version do you work with - is your JAVA_HOME set  
> correctly and does Eclipse uses the correct JDK (and not some JRE) ?
>
> Best
> andreas
>
> Ola Spjuth wrote:
>> Hi,
>>
>> After following the docs for jMoby in eclipse (I had to add Home/  
>> to line line 108 in build.xml to look like <fileset dir="$ 
>> {java.home}/../Home/lib">), and generating datatypes, I tried to  
>> start dashboard and got the following exception:
>>
>> dashboard:
>> [Dashboard] Exception in thread "main"  
>> java.lang.NoClassDefFoundError: org/apache/commons/collections/map/ 
>> LinkedMap
>> [Dashboard]     at  
>> org.apache.commons.configuration.BaseConfiguration.<init> 
>> (BaseConfiguration.java:54)
>> [Dashboard]     at  
>> org.apache.commons.configuration.CompositeConfiguration.clear 
>> (CompositeConfiguration.java:159)
>> [Dashboard]     at  
>> org.apache.commons.configuration.CompositeConfiguration.<init> 
>> (CompositeConfiguration.java:56)
>> [Dashboard]     at  
>> org.biomoby.service.dashboard.DashboardConfig.get 
>> (DashboardConfig.java:117)
>> [Dashboard]     at  
>> org.biomoby.service.dashboard.DashboardConfig.getString 
>> (DashboardConfig.java:243)
>> [Dashboard]     at  
>> org.biomoby.service.dashboard.Dashboard.getProperty(Dashboard.java: 
>> 208)
>> [Dashboard]     at  
>> org.biomoby.service.dashboard.Dashboard.getComponent 
>> (Dashboard.java:485)
>> [Dashboard]     at org.biomoby.service.dashboard.Dashboard.<init> 
>> (Dashboard.java:176)
>> [Dashboard]     at org.biomoby.service.dashboard.Dashboard.main 
>> (Dashboard.java:988)
>>
>> I am new to maven and don't really now how I should fix this  
>> dependency.
>> Any suggestions for a solution?
>>
>> Cheers,
>>
>> /Ola
>> _______________________________________________
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>> moby-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/moby-l
>
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