From gordonp at dev.open-bio.org Fri Mar 9 12:13:07 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:13:07 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091713.l29HD7vc023316@dev.open-bio.org>
gordonp
Fri Mar 9 12:13:07 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services
In directory dev.open-bio.org:/tmp/cvs-serv23282/src/main/ca/ucalgary/services
Log Message:
Directory /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services added to the repository
moby-live/Java/src/main/ca/ucalgary/services - New directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/RCS/-,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/RCS/New,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/RCS/directory,v: No such file or directory
From gordonp at dev.open-bio.org Fri Mar 9 12:13:57 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:13:57 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091713.l29HDvi1023358@dev.open-bio.org>
gordonp
Fri Mar 9 12:13:57 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util
In directory dev.open-bio.org:/tmp/cvs-serv23324/src/main/ca/ucalgary/services/util
Log Message:
Directory /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util added to the repository
moby-live/Java/src/main/ca/ucalgary/services/util - New directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/RCS/-,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/RCS/New,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/RCS/directory,v: No such file or directory
From gordonp at dev.open-bio.org Fri Mar 9 12:14:11 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:14:11 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091714.l29HEBP4023400@dev.open-bio.org>
gordonp
Fri Mar 9 12:14:11 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test
In directory dev.open-bio.org:/tmp/cvs-serv23366/src/main/ca/ucalgary/services/util/test
Log Message:
Directory /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test added to the repository
moby-live/Java/src/main/ca/ucalgary/services/util/test - New directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test/RCS/-,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test/RCS/New,v: No such file or directory
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test/RCS/directory,v: No such file or directory
From gordonp at dev.open-bio.org Fri Mar 9 12:16:55 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:16:55 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091716.l29HGtpa023495@dev.open-bio.org>
gordonp
Fri Mar 9 12:16:55 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test
In directory dev.open-bio.org:/tmp/cvs-serv23450/src/main/ca/ucalgary/services/util/test
Added Files:
ACDFileTestCase.java ACDFileTestCase.java~ transeq.acd
Log Message:
Start of commit for ACD service wrapping
moby-live/Java/src/main/ca/ucalgary/services/util/test ACDFileTestCase.java,NONE,1.1 ACDFileTestCase.java~,NONE,1.1 transeq.acd,NONE,1.1
From gordonp at dev.open-bio.org Fri Mar 9 12:16:55 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:16:55 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091716.l29HGtSJ023481@dev.open-bio.org>
gordonp
Fri Mar 9 12:16:55 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util
In directory dev.open-bio.org:/tmp/cvs-serv23450/src/main/ca/ucalgary/services/util
Added Files:
ACDFile.java
Log Message:
Start of commit for ACD service wrapping
moby-live/Java/src/main/ca/ucalgary/services/util ACDFile.java,NONE,1.1
From gordonp at dev.open-bio.org Fri Mar 9 12:18:01 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 12:18:01 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091718.l29HI1MD023582@dev.open-bio.org>
gordonp
Fri Mar 9 12:18:01 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test
In directory dev.open-bio.org:/tmp/cvs-serv23549/src/main/ca/ucalgary/services/util/test
Removed Files:
ACDFileTestCase.java~
Log Message:
Mistaken import of editor backup file
moby-live/Java/src/main/ca/ucalgary/services/util/test ACDFileTestCase.java~,1.1,NONE
rcsdiff: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/test/RCS/ACDFileTestCase.java~,v: No such file or directory
From gordonp at dev.open-bio.org Fri Mar 9 13:01:10 2007
From: gordonp at dev.open-bio.org (Paul Gordon)
Date: Fri, 9 Mar 2007 13:01:10 -0500
Subject: [MOBY-guts] biomoby commit
Message-ID: <200703091801.l29I1A6h023649@dev.open-bio.org>
gordonp
Fri Mar 9 13:01:09 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util
In directory dev.open-bio.org:/tmp/cvs-serv23614/src/main/ca/ucalgary/services/util
Modified Files:
ACDFile.java
Log Message:
Updated javadoc
moby-live/Java/src/main/ca/ucalgary/services/util ACDFile.java,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/ACDFile.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/ACDFile.java 2007/03/09 17:16:55 1.1
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/util/ACDFile.java 2007/03/09 18:01:09 1.2
@@ -141,6 +141,13 @@
return application;
}
+ /**
+ * Returns a list representing the blocks of the section. Each block
+ * is a map of key/value pairs corresponding to the tag-name/tag-value pairs
+ * of the ACD block. Two hardcoded keys are the block name (BLOCK_NAME_KEY)
+ * such as "sequence", "trim", "clean"
+ * and the block type (BLOCK_TYPE_KEY) such as "list", "boolean", "range", etc.
+ */
public List
This will run the service to make sure it works, then register it with MOBY Central. You'll see
@@ -243,7 +243,7 @@
Since it isn't useful for everyone who uses this tutorial to host this service, please
unregister it now with the following command:
-
java -jar ConvertAAtoFASTA_AA.war http://your.servlet.host:8080/ConvertAAtoFASTA_AA unregister
+ java -jar ConvertAAtoFASTA_AA.war http://your.servlet.host:8080/ConvertAAtoFASTA_AA/ unregister
You should get "Service Successfully Unregistered!" if it worked.
@@ -320,7 +320,7 @@
Paul Gordon
-Last modified: Wed Dec 6 08:36:43 MST 2006
+Last modified: Thu Feb 22 09:20:25 MST 2007