[MOBY-guts] biomoby commit

[Lonny Montoya]

lxm
Sat Jun 24 22:09:22 EDT 2006
Update of /home/repository/moby/s-moby/dserver/src/org/semanticmoby/dserver
In directory dev.open-bio.org:/tmp/cvs-serv15129/dserver/src/org/semanticmoby/dserver

Modified Files:
	AllResourcesDiscoveryServlet.java DiscoveryQuery.java 
	DiscoveryServlet.java GraphDiscoveryServlet.java 
	InitServlet.java KeywordDiscoveryServlet.java 
	MetadataRetriever.java ResourceInvestigationServlet.java 
	StorageManager.java URIInvestigator.java 
Added Files:
	ServerServlet.java 
Removed Files:
	MOBYProperties.java 
Log Message:
several changes to error handling and logging,

fixed a bug in the logging system where the same static logger was being
used for different log files, which caused the logger to be re-initialized
every time it wrote to a different log file,
an instance of the logger is now used for each log file, which caused 
several changes to the code, so that the logger instance was no longer
referenced from a static context,

reformatted the logs to print out stack traces for logging statements
(usually error statements) that were generated as the result of an
exception

also, changed the printStackTrace statements in catches throughout the
code to log.error statements instead 


s-moby/dserver/src/org/semanticmoby/dserver ServerServlet.java,NONE,1.1 AllResourcesDiscoveryServlet.java,1.1,1.2 DiscoveryQuery.java,1.4,1.5 DiscoveryServlet.java,1.5,1.6 GraphDiscoveryServlet.java,1.4,1.5 InitServlet.java,1.3,1.4 KeywordDiscoveryServlet.java,1.4,1.5 MetadataRetriever.java,1.3,1.4 ResourceInvestigationServlet.java,1.1,1.2 StorageManager.java,1.3,1.4 URIInvestigator.java,1.1,1.2 MOBYProperties.java,1.3,NONE