[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Fri Oct 21 13:45:01 EDT 2005
Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/extended
In directory pub.open-bio.org:/tmp/cvs-serv2292/org/biomoby/shared/extended

Modified Files:
	ServiceTypeParser.java 
Log Message:
added the parsing logic for the rdf document describing the service type ontology.

moby-live/Java/src/main/org/biomoby/shared/extended ServiceTypeParser.java,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/extended/ServiceTypeParser.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/extended/ServiceTypeParser.java	2005/10/18 18:37:13	1.1
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/extended/ServiceTypeParser.java	2005/10/21 17:45:01	1.2
@@ -14,6 +14,9 @@
 import com.hp.hpl.jena.rdf.model.Model;
 import com.hp.hpl.jena.rdf.model.ModelFactory;
 import com.hp.hpl.jena.rdf.model.RDFReader;
+import com.hp.hpl.jena.rdf.model.ResIterator;
+import com.hp.hpl.jena.rdf.model.Resource;
+import com.hp.hpl.jena.vocabulary.RDFS;
 
 /**
  * 
@@ -139,7 +142,21 @@
 		Model model = ModelFactory.createDefaultModel();
 		RDFReader reader = model.getReader();
 		reader.read(model, new StringReader(getRdfAsString()), null);
-		// TODO start querying the model and creating Service Type objects
+		// start querying the model and creating Service Type objects
+		ResIterator iterator = model.listSubjects();
+		while (iterator.hasNext()) {
+			Resource resource = iterator.nextResource();
+			String name = resource.getLocalName();
+			MobyServiceType servicetype = new MobyServiceType(name);
+			if (!resource.hasProperty(RDFS.subClassOf)) {
+				continue;
+			}
+			String parent = resource.getProperty(RDFS.subClassOf).getObject().toString();
+			servicetype.setParentNames(new String[] {parent});
+			String description = resource.getProperty(RDFS.comment).getLiteral().getString();
+			servicetype.setDescription(description);
+			list.add(servicetype);
+		}
 
 		// return the array
 		return (MobyServiceType[]) list
@@ -153,7 +170,6 @@
 	private String getRdfAsString() {
 		String s = null;
 		StringBuffer sb = new StringBuffer();
-		URL url = null;
 		try {
 			BufferedReader in = null;
 			in = new BufferedReader(new InputStreamReader(url.openStream()));
@@ -166,4 +182,12 @@
 		}
 		return sb.toString();
 	}
+	
+	public static void main(String[] args) throws MobyException {
+		ServiceTypeParser p = new ServiceTypeParser("http://biomoby.org/RESOURCES/MOBY-S/Services");
+		MobyServiceType[] types = p.getMobyServiceTypesFromRDF();
+		for (int i = 0; i < types.length; i++) {
+			System.out.println(types[i]);
+		}
+	}
 }