[MOBY-dev] moby services deployment
Elise Larsonneur
Elise.Larsonneur at avignon.inra.fr
Thu May 27 08:18:33 UTC 2010
Hello !
I forgot to specify that I use a Tomcat 5.5.1 server.
Thanks
Elise.
Elise Larsonneur wrote:
> Before deploying webservices , I generated datatypes and skeletons in
> jMoby with the dashboard. Then, I wrote the implementations of
> skeletons in another project associated to jMoby.
> So, after ant all, ant dashboard, when I launchs the deployment of
> these webservices (on remote or local machine) , only the wsdd files
> are created and the previous error displays.
> I used a pattern for implementation class names in the Moses Generator
> Panel.
>
> eclipse console : ant all :
> Buildfile: /home/av07/gafl/elarsonneur/workspace/jMoby/build.xml
> cleanapi:
> clean:
> [delete] Deleting directory
> /home/av07/gafl/elarsonneur/workspace/jMoby/build
> checkmaven:
> initmaven:
> init:
> [mkdir] Created dir: /home/av07/gafl/elarsonneur/workspace/jMoby/build
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/classes
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/Clients
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/registry_servlets
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/run
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/others
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/test
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/core
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/coreservice
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/central
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/model
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/modelgui
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/generator
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/ontology
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/inb/visualizers
> config:
> [copy] Copying 1 file to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/classes
> [copy] Copying 27 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/run
> [copy] Copying 10 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/Clients/help
> [copy] Copying 24 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/classes/templates
> [copy] Copying 163 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/classes
> compile:
> [javac] Compiling 392 source files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/classes
> [javac] Note:
> /home/av07/gafl/elarsonneur/workspace/jMoby/src/main/ca/ucalgary/services/util/PBERecorder.java
> uses or overrides a deprecated API.
> [javac] Note: Recompile with -Xlint:deprecation for details.
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] Compiling 26 source files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/Clients
> docs:
> [javadoc] Generating Javadoc
> [javadoc] Javadoc execution
> [javadoc]
> /home/av07/gafl/elarsonneur/workspace/jMoby/src/main/org/inb/biomoby/central/gui/model/MobyObjectPropertiesTableModel.java:72:
> warning - @return tag has no arguments.
> [javadoc] 1 warning
> jars:
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/jmoby-1.1.1.jar
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/jmoby-dashboard-1.1.1.jar
>
> rdfagent-init:
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent
> jar-rdfagent:
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/temp_lib
> [copy] Copying 95 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/temp_lib
> [delete] Deleting directory
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/temp_lib
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/RDFagent.jar
> war:
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/webapps/jmoby
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/webapps/jmoby/cache
> [copy] Copying 1 file to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/webapps/jmoby
> [war] Building war:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/webapps/jmoby/jmoby.war
> wardist:
> [copy] Copying 1 file to
> /home/av07/gafl/elarsonneur/workspace/jMoby/docs/dist
> bindist-rdfagent:
> [delete] Deleting directory
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/rdfagent
> [copy] Copying 96 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/rdfagent/lib
> [copy] Copying 1 file to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/rdfagent
> [copy] Copying 1 file to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/rdfagent
> [copy] Copying 6 files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/rdfagent/rdfagent
> [tar] Building tar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/docs/dist/rdfagent-2010-05-26.tar.gz
>
> [zip] Building zip:
> /home/av07/gafl/elarsonneur/workspace/jMoby/docs/dist/rdfagent-2010-05-26.zip
>
> all:
> BUILD SUCCESSFUL
>
>
>
> ant dashboard :
> Buildfile: /home/av07/gafl/elarsonneur/workspace/jMoby/build.xml
> checkmaven:
> initmaven:
> init:
> config:
> compile:
> moses-init:
> samples-init:
> [mkdir] Created dir:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/others/samples/resources
>
> dashboard-init:
> dashboard-config:
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/dashboard-config.jar
>
> dashboard:
> [Dashboard] 144276 [Thread-49] ERROR SimpleAnt -
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:306:
> The following error occurred while executing this line:
> [Dashboard]
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:371:
> The following error occurred while executing this line:
> [Dashboard]
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:224:
> Property 'service.jar' is not defined.
>
>
>
> Dashboard console :
> Selected authorities:
> avilin05.avignon.inra.fr
>
> -find-services:
> [Services names]
> Solstis_getExpDescFromAuthor,Solstis_getTrait,Solstis_getAuthor,Solstis_getExperiment,Solstis_getExpFromDataset,Solstis_getProject,Solstis_getExperimentDesc,Solstis_getDatasetDescFromKeyword,Solstis_getFactor,jar,Solstis_getExperimentType,Solstis_getDatasetFromExp
>
>
> compile-datatypes:
> [javac] Compiling 1796 source files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/others/datatypes
>
> compile-services:
> [javac] Compiling 21 source files to
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/others/skeletons
>
> jar-datatypes:
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/biomoby-datatypes.jar
>
>
> jar-services:
> [jar] Building jar:
> /home/av07/gafl/elarsonneur/workspace/jMoby/build/lib/biomoby-skeletons.jar
>
>
> deploy-remote:
> [mkdir] Created dir:
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26
>
>
> create-wsdd:
> [Create Solstis_getExpDescFromAuthor.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getTrait.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getAuthor.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getExperiment.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getExpFromDataset.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getProject.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getExperimentDesc.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getDatasetDescFromKeyword.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> create-wsdd:
> [Create Solstis_getFactor.wsdd] Copying 1 file to
> /tmp/mobyremotedeploy-elarsonneur/null1398203687/moby-services-to-deploy-2010-05-26/deploy-wsdd
>
>
> BUILD FAILED
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:306:
> The following error occurred while executing this line:
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:371:
> The following error occurred while executing this line:
> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:224:
> Property 'service.jar' is not defined.
>
>
> Thanks,
>
> Elise.
>
>
>
>
>
>
> Edward Kawas wrote:
>> Hi Elise,
>>
>> Did you make sure to generate the skeletons and their implementations
>> first?
>> Hard to say what the problem is without knowing what you did to get
>> here.
>>
>> Eddie
>>
>>
>>> -----Original Message-----
>>> From: moby-dev-bounces at lists.open-bio.org [mailto:moby-dev-
>>> bounces at lists.open-bio.org] On Behalf Of Elise Larsonneur
>>> Sent: Wednesday, May 26, 2010 2:03 AM
>>> To: moby-dev at lists.open-bio.org
>>> Subject: [MOBY-dev] moby services deployment
>>>
>>> Hi !
>>>
>>> When I want to deploy moby services by ant dashboard on remote machine,
>>> I meet this problem :
>>>
>>> The following error occurred while executing this line:
>>> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:371:
>>> The following error occurred while executing this line:
>>> /home/av07/gafl/elarsonneur/workspace/jMoby/xmls/deployBuild.xml:224:
>>> Property 'service.jar' is not defined.
>>>
>>> What can I do for resolving this problem ?
>>>
>>> Thanks,
>>>
>>> Elise Larsonneur
>>> Bioinformatics trainee.
>>> UR GAFL
>>> INRA Avignon
>>> France
>>>
>>> _______________________________________________
>>> MOBY-dev mailing list
>>> MOBY-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>>
>>
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>>
>
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