[MOBY-dev] Perl BioMoby install

[Pieter Neerincx]

Hi Eddie,

On 12•May•2008, at 3:14 PM, Edward Kawas wrote:

> Hi Pieter,
>
> I have fixed the first problem that you have encountered, but I  
> haven't
> gotten around to a new cpan release. I have been waiting on a few  
> things
> first.

Thanks!

> The second problem with regards to versioning may also be fixed. I  
> am not
> sure if the versioning for wsrf has been fixed for our makefile, but  
> the
> io::prompt and LS should be.

Thanks again! I e-mailed the maintainer of the WSRF::Lite module and  
requested the addition of a $VERSION variable... So that might get  
fixed in the near future too :) We'll see...

Cheers,

Pi

> Thanks,
>
> Eddie
>
> -----Original Message-----
> From: moby-dev-bounces at lists.open-bio.org
> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Pieter  
> Neerincx
> Sent: May-12-08 4:20 AM
> To: Core developer announcements
> Subject: [MOBY-dev] Perl BioMoby install
>
> Hi,
>
> I upgraded my Perl BioMoby install yesterday and noticed two minor
> problems:
>
> 1. Failed test t/MOBY:
>
> t/MOBY........................
> #   Failed test 'use MOBY;'
> #   in t/MOBY.t at line 9.
> #     Tried to use 'MOBY'.
> #     Error:  Can't locate MOBY.pm in @INC (@INC contains:
> .....<cut>.....
> # BEGIN failed--compilation aborted at t/MOBY.t line 9.
> t/MOBY........................NOK 1/1# Looks like you failed 1 test of
> 1.
> t/MOBY........................dubious
>         Test returned status 1 (wstat 256, 0x100)
> DIED. FAILED test 1
>         Failed 1/1 tests, 0.00% okay
>
>
> This test doesn't seem to be very useful. All it does is try a "use
> MOBY;", which fails as MOBY.pm doesn't exist and as far is I know
> shouldn't exist. Can I remove this test from the CVS tree or did I
> miss something and is the test correctly reporting a failure
> indicating a problem?
>
> 2. Perl module version number fishiness:
>
> -----------------------------------------
> *** Module::AutoInstall version 1.03
> *** Checking for Perl dependencies...
> [Core Features]
> - Test::More               ...loaded. (0.62 >= 0.42)
> - Test::Simple             ...loaded. (0.62 >= 0.44)
> - ExtUtils::MakeMaker      ...loaded. (6.17 >= 6.11)
> - Carp                     ...loaded. (1.01)
> - File::Spec               ...loaded. (3.19 >= 0.80)
> - SOAP::Lite               ...loaded. (0.69 >= 0.69)
> - XML::LibXML              ...loaded. (1.66 >= 1.62)
> - IO::Stringy              ...loaded. (2.110 >= 2.110)
> - Unicode::String          ...loaded. (2.09 >= 2.09)
> - File::ShareDir           ...loaded. (0.05 >= 0.05)
> - Template                 ...loaded. (2.19)
> - Class::Inspector         ...loaded. (1.18 >= 1.17)
> - RDF::Core                ...loaded. (0.51 >= 0.51)
> - XML::XPath               ...loaded. (1.13 >= 1.12)
> - Text::Shellwords         ...loaded. (1.08 >= 1.00)
> - HTML::Entities           ...loaded. (1.27 >= 0.01)
> - LS                       ...loaded. (1.1.7 >= 1.1.7)
> - DBI                      ...loaded. (1.410 >= 0.01)
> - DBD::mysql               ...loaded. (2.900300 >= 0.01)
> - IO::Prompt               ...loaded. (0.099004 >= 0.99.2)
> - IPC::Shareable           ...loaded. (0.600 >= 0.6)
> - WSRF::Lite               ...missing. (would need 0.008.2.2)
> - XML::DOM                 ...loaded. (1.430)
> - DateTime::Format::Epoch  ...loaded. (0.100)
> - DateTime::Format::W3CDTF ...loaded. (0.040)
> - HTTP::Daemon             ...loaded. (1.360)
> - HTTP::Daemon::SSL        ...loaded. (1.020)
> - MIME::Base64             ...loaded. (3.050)
> - Digest::SHA1             ...loaded. (2.070)
> - Crypt::OpenSSL::RSA      ...loaded. (0.250)
> - XML::CanonicalizeXML     ...loaded. (0.030 >= 0.02)
> - Sys::Hostname::Long      ...loaded. (1.400)
> - Crypt::OpenSSL::X509     ...loaded. (0.500)
> ==> Auto-install the 1 mandatory module(s) from CPAN? [y] n
> ==> The module(s) are mandatory! Really skip? [n] y
> *** Module::AutoInstall configuration finished.
> -----------------------------------------
> So far so good. It only complains about WSRF::Lite. I have version
> 0.8.2.2 installed, but this module doesn't report a version number and
> therefore the dependency check fails. But now it continues:
>
> -----------------------------------------
>
> Checking if your kit is complete...
>
> Looks good
>
> Warning: prerequisite IO::Prompt 0.99.2 not found. We have 0.099004.
> Warning: prerequisite LS 1.1.7 not found. We have 1.001007.
> Warning: prerequisite WSRF::Lite 0.008.2.2 not found. We have unknown
> version.
>
>>
> -----------------------------------------
>
> This is weird. First it finds LS and IO::Prompt and detects the
> version numbers correctly, but apparently it checks them slightly
> differently now and fails to notice the versions I have are just  
> fine...
>
> Cheers,
>
> Pi
>
>
>
>
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