[MOBY-dev] WG: [Fwd: Problem with xercexImpl-2.6.2.jar]

[Edward Kawas]

I found that class in other packages, org.apache.jasper.xmlparsers,
org.apache.axis.utils, etc.

I didn't find anyone with the same package as the one that we need though.

I also couldn't find why it was not included in java 5, although, I did find
http://jcs.mobile-utopia.com/jcs/53280_XMLChar.java and it makes you think
that the class is part of the package
com.sun.org.apache.xcerces.internal.util.

I will keep looking,

Eddie
-----Original Message-----
From: moby-dev-bounces at lists.open-bio.org
[mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Martin Senger
Sent: March-14-08 4:51 AM
To: Core developer announcements; Eddie Kawas
Subject: Re: [MOBY-dev] WG: [Fwd: Problem with xercexImpl-2.6.2.jar]

Eddie,

the problem reported by Andreas is caused in the Jena package (Jena needs
the XMLChar library). Could you look why this class is not part of the Java
1.5? Can it be found elsewhere than in xerces? [The xerces itself caused
problems from other reasons - see previous emails about it if you wish, or I
can re-send them.]

The full stack (with a command-line how you can replicate it) is here:

senger at sherekhan:~/jMoby$ build/run/run-cache-client -fill -cachedir
anotherMyCache/ -v -stack
Retrieving namespaces...    0:00:02.384
Retrieving data types...    ===ERROR===
java.lang.NoClassDefFoundError: org/apache/xerces/util/XMLChar
        at com.hp.hpl.jena.rdf.model.impl.Util.notNameChar(Util.java:87)
        at com.hp.hpl.jena.rdf.model.impl.Util.splitNamespace(Util.java:67)
        at com.hp.hpl.jena.graph.Node_URI.getLocalName(Node_URI.java:55)
        at com.hp.hpl.jena.rdf.model.impl.ResourceImpl.getLocalName(
ResourceImpl.java:126)
        at com.hp.hpl.jena.rdf.model.impl.PropertyImpl.checkLocalName(
PropertyImpl.java:78)
        at com.hp.hpl.jena.rdf.model.impl.PropertyImpl.<init>(
PropertyImpl.java:86)
        at com.hp.hpl.jena.rdf.model.ResourceFactory$Impl.createProperty(
ResourceFactory.java:244)
        at com.hp.hpl.jena.rdf.model.ResourceFactory.createProperty(
ResourceFactory.java:120)
        at com.hp.hpl.jena.vocabulary.RDF.property(RDF.java:32)
        at com.hp.hpl.jena.vocabulary.RDF.<clinit>(RDF.java:45)
        at com.hp.hpl.jena.ontology.impl.OntResourceImpl.<clinit>(
OntResourceImpl.java:63)
        at com.hp.hpl.jena.enhanced.BuiltinPersonalities.<clinit>(
BuiltinPersonalities.java:28)
        at com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:51)
        at com.hp.hpl.jena.rdf.model.ModelFactory.createDefaultModel(
ModelFactory.java:124)
        at com.hp.hpl.jena.rdf.model.ModelFactory.createDefaultModel(
ModelFactory.java:118)
        at
org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(
DataTypeParser.java:156)
        at org.biomoby.client.CentralDigestCachedImpl.fillDataTypesCache(
CentralDigestCachedImpl.java:125)
        at org.biomoby.client.CentralDigestCachedImpl.getDataTypes(
CentralDigestCachedImpl.java:769)
        at CacheRegistryClient.main(CacheRegistryClient.java:85)


Cheers,
Martin

-- 
Martin Senger
email: martin.senger at gmail.com
m.senger at cgiar.org
skype: martinsenger
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