[MOBY-dev] error in java moby request

[Fiers, Mark]

Hi Martin,

The code is attached and the exact error message is:

Fetching data type ontology from http://moby.ucalgary.ca/RESOURCES/MOBY-S/Objects
 ... done
Fetching namespace ontology from http://moby.ucalgary.ca/RESOURCES/MOBY-S/Namespaces
Exception in thread "main" org.biomoby.shared.MobyException: Attempted to build a composite MOBY object from XML, but the tag (MSCmlspectUrl) does not correspond to an existing data type in the registry (default).  Please check the spelling and capitalization of the XML tag, to match a registered data type.
	at org.biomoby.shared.data.MobyDataComposite.<init>(MobyDataComposite.java:42)
	at org.biomoby.shared.data.MobyDataObject.createInstanceFromDOM(MobyDataObject.java:215)
	at org.biomoby.shared.data.MobyDataObject.createInstanceFromDOM(MobyDataObject.java:178)
	at org.biomoby.shared.data.MobyContentInstance.parseDataGroup(MobyContentInstance.java:245)
	at org.biomoby.shared.data.MobyContentInstance.<init>(MobyContentInstance.java:130)
	at org.biomoby.shared.data.MobyDataUtils.fromXMLDocument(MobyDataUtils.java:236)
	at org.biomoby.client.MobyRequest.invokeService(MobyRequest.java:306)
	at org.biomoby.client.MobyRequest.invokeService(MobyRequest.java:282)
	at org.biomoby.client.MobyRequest.invokeService(MobyRequest.java:275)
	at biomoby_clients.TestXcmsGetPeaks.main(TestXcmsGetPeaks.java:66)


hopefully that helps,

and thanks!

Mark



-----Original Message-----
From: moby-dev-bounces at lists.open-bio.org on behalf of Martin Senger
Sent: Fri 3/14/2008 12:56 PM
To: Core developer announcements
Subject: Re: [MOBY-dev] error in java moby request
 
> and subsequently call a service I'm trying to develop, but that ends in an
> error.
>
> Appearantly the code is looking at the default registry, as the script
> prints:
>
>  Fetching data type ontology from
> http://moby.ucalgary.ca/RESOURCES/MOBY-S/Objects
>     ... done
>

What does your code do (what method of CentralImpl is it trying to call)
when it fails? Knowing this will help me to reproduce the problem.

Thanks,
Martin

-- 
Martin Senger
email: martin.senger at gmail.com
m.senger at cgiar.org
skype: martinsenger
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