[MOBY-dev] help: local registry installation

[Mark Wilkinson]

Never seen that error before...

perhaps check that your LibXML C libraries are up-to-date?  They are used  
by the XML::LibXML module that Moby uses for XML parsing.

M



On Wed, 30 May 2007 20:12:32 -0700, Barboza, Lord Hendrix (IRRI)  
<L.Barboza at cgiar.org> wrote:

> I have already got and installed the biomoby code in the server. Then
> running the "make test" give me this result:
>
>
> PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
> "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
>
> t/Central.....................ok
>
>
> t/Client-Central..............ok 22/0:7: parser error : Sequence ']]>'
> not allowed in content
>
> ]]>]]></message>
>
>    ^
>
> :7: parser error : internal error
>
> ]]>]]></message>
>
>    ^
>
> :7: parser error : Extra content at the end of the document
>
> ]]>]]></message>
>
>    ^
>
>  at /usr/local/moby-live/Perl/blib/lib/MOBY/Client/Central.pm line 2107
>
> t/Client-Central..............ok 23/0# Looks like your test died just
> after 23.
>
> t/Client-Central..............dubious
>
>
>         Test returned status 255 (wstat 65280, 0xff00)
>
>         after all the subtests completed successfully
>
> t/Client-CollectionArticle....ok
>
>
> t/Client-OntologyServer.......ok
>
>
> t/Client-Registration.........ok
>
>
> t/Client-SecondaryArticle.....ok
>
>
> t/Client-Service..............ok 2/0:7: parser error : Sequence ']]>'
> not allowed in content
>
> ]]>]]></message>
>
>    ^
>
> :7: parser error : internal error
>
> ]]>]]></message>
>
>    ^
>
> :7: parser error : Extra content at the end of the document
>
> ]]>]]></message>
>
>    ^
>
>  at /usr/local/moby-live/Perl/blib/lib/MOBY/Client/Central.pm line 2107
>
> # Looks like your test died just after 2.
>
> t/Client-Service..............dubious
>
>
>         Test returned status 255 (wstat 65280, 0xff00)
>
>         after all the subtests completed successfully
>
> t/Client-ServiceInstance......ok
>
>
> t/Client-SimpleArticle........ok
>
>
> t/CommonSubs..................ok
>
>
> t/Config......................skipped
>
>         all skipped: Required only when you have your own local MOBY
> Central
>
> t/CrossReference..............ok
>
>
> t/Template....................ok
>
>
> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
>
> ------------------------------------------------------------------------
> -------
>
> t/Client-Central.t  255 65280    23    0   0.00%  ??
>
> t/Client-Service.t  255 65280     2    0   0.00%  ??
>
> 1 test skipped.
>
> Failed 2/13 test scripts, 84.62% okay. 0/235 subtests failed, 100.00%
> okay.
>
> make: *** [test_dynamic] Error 255
>
> lbarboza at cropwiki:/usr/local/moby-live/Perl$ <MOBYRegistration>
>
> -bash: syntax error near unexpected token `newline'
>
>
>
> I am using perl v5.8.4. pls help
>
>
> thanks
>
>
> Lord  Hendrix A. Barbozax`
>
> Programmer - Web Services
>
> Crop Research Informatics Laboratory (CRIL)
>
>
>
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/moby-dev



-- 
--
Mark Wilkinson
Assistant Professor, Dept. Medical Genetics
University of British Columbia
PI Bioinformatics
iCAPTURE Centre, St. Paul's Hospital
Tel:  604 682 2344 x62129
Fax:  604 806 9274

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