[MOBY-dev] [moby] Re: RFC #1914 - change & call for vote

[Anacleto, Mylah Rystie (IRRI)]

Hi,

We have a local registry, I followed the steps on how to create/populate
the database and am expecting that the contents of our db now contains
the same datatypes, service types, namespaces, services as in moby
central.

I am running a script that mirrors the moby central database (also
regularly updates our local registry here at IRRI). Since the db has
just been refreshed, I expect no discrepancies(the script traps
discrepancies in LSIDs, IDs, inputs, outputs, etc..) but I did get a lot
reported with different LSIDs.  I am still looking into it but I guess
it's not the mirroring program. Must be the dump perl script? (java api
has one that calls the perl dump script and that's the one I used)

Thanks,
Mylah


-----Original Message-----
From: moby-dev-bounces at biomoby.org [mailto:moby-dev-bounces at biomoby.org]
On Behalf Of Pieter Neerincx
Sent: Wednesday, January 25, 2006 4:47 AM
To: Core developer announcements
Subject: Re: [MOBY-dev] [moby] Re: RFC #1914 - change & call for vote

Hi Martin,

On  21Jan2006, at 07:43, Martin Senger wrote:

> Hi,
>    Thanks for supporting the idea of having version in LSIDs.
>    I think that Mark answered all your questions. Just perhaps one  
> small
> explanation:
>
>> registered, we specify the input and output. Lets say for example I
>> register service A with as input a simple Object SomeObject_version1.
>>
>    Your assumption here is not correct: a service is not registered as
> having a simple Object SomeObject_version1, but as having a simple  
> Object
> SomeObject. We are not proposing to use version in registration -  
> we are
> registering data types by their names (not by their LSIDs).  
> Versions in
> LSIDs are good for finding that the object itself was or was not
> re-registerd (and therefore perhap changed).

Thanks for the explanation. This wasn't clear to me yet, so I made  
some wrong assumptions.
Leaving the LSIDs and therefore version numbers out for the objects  
when registering services makes life much easier :).

Bring on the version numbered LSIDs!

Pi


>    Cheers,
>    Martin
>
> -- 
> Martin Senger
>    email: martin.senger at gmail.com
>    skype: martinsenger
> consulting for:
>    International Rice Research Institute
>    Biometrics and Bioinformatics Unit
>    DAPO BOX 7777, Metro Manila
>    Philippines, phone: +63-2-580-5600 (ext.2324)
>
>

Wageningen University and Research centre (WUR)
Laboratory of Bioinformatics
Transitorium (building 312) room 1038
Dreijenlaan 3
6703 HA Wageningen
phone: 0317-484 706
fax: 0317-483 584
mobile: 06-143 66 783
pieter.neerincx at wur.nl

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