[EMBOSS] extractfeat problem with complement() in CDS

Anne Pajon ap12 at sanger.ac.uk
Fri Nov 13 10:14:54 UTC 2009


Dear Peter,

Thanks for your answer. Let me know when a fix is available for testing.

Would your advice be for the time being to use the version 6.0.1-4  
instead of 6.1.0-3?

Thanks to let me know.

Kind regards,
Anne.

On 12 Nov 2009, at 18:29, Peter Rice wrote:

> Dear Anne,
>
> Anne Pajon wrote:
>
>> extractfeat -sequence embl::LGA251_reduced.embl -type CDS
>> Does anyone know why it is not extracting the correct sequence for  
>> the CDS features with the latest version of emboss? I am running it  
>> on Mac OSX and I've installed it with fink.
>
> This is a bug. We have a partial fix, but need a little more testing  
> to make sure it fixes all cases.
>
> regards,
>
> Peter Rice

--
Dr Anne Pajon - Pathogen Genomics
Sanger Institute, Wellcome Trust Genome Campus, Hinxton
Cambridge CB10 1SA, United Kingdom
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