[EMBOSS] Antwort: "entret", "seqret", & "whichdb" don't work

[haruosuz at yahoo.co.jp]

Thank you very much for your advises.

http://emboss.sourceforge.net/docs/themes/Databases.html
I made the two configuration files (emboss.default & .embossrc) and  
"showdb"
showed the database, but the commands (entret, seqret, & whichdb)  
don't work.
The details are described below.

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http://emboss.sourceforge.net/docs/themes/Databases.html#default
The emboss.default file

(1) emboss.default (share/EMBOSS)
$ cd /usr/local/share/EMBOSS
$ su
# cp emboss.default.template emboss.default

(2) .embossrc (personal home directory)
.embossrc
set emboss_acdroot /usr/local/share/EMBOSS/acd


http://emboss.sourceforge.net/docs/themes/Databases.html#test
Testing the database definitions (run showdb)

$showdb
Displays information on the currently available databases
# Name        Type ID  Qry All Comment
# ====        ==== ==  === === =======
tpir          P    OK  OK  OK  PIR using NBRF access for 4 files
tsw           P    OK  OK  OK  Swissprot native format with EMBL CD- 
ROM index
tswnew        P    OK  OK  OK  Swissnew as 3 files in native format  
with EMBL CD-ROM index
twp           P    OK  OK  OK  EMBL new in native format with EMBL CD- 
ROM index
tembl         N    OK  OK  OK  EMBL in native format with EMBL CD-ROM  
index
tgb           N    OK  -   -   Genbank IDs
tgenbank      N    OK  OK  OK  GenBank in native format with EMBL CD- 
ROM index


http://www.csc.fi/molbio/progs/emboss/doc/programs/html/entret.html
$entret tembl:hsfau
Reads and writes (returns) flatfile entries
Warning: Cannot open division file '<null>' for database 'tembl'
Warning: seqCdQry failed
Error: Unable to read sequence 'tembl:hsfau'
Died: entret terminated: Bad value for '-sequence' and no prompt


http://www.csc.fi/molbio/progs/emboss/doc/programs/html/seqret.html
$seqret
Reads and writes (returns) sequences
Input sequence(s): tembl:hsfau
Warning: Cannot open division file '<null>' for database 'tembl'
Warning: seqCdQry failed
Error: Unable to read sequence 'tembl:hsfau'
Input sequence(s):


http://www.csc.fi/molbio/progs/emboss/doc/programs/html/whichdb.html
$whichdb -showall
Search all databases for an entry
ID or Accession number: hsfau1
Output file [outfile.whichdb]: stdout
# Trying 'twp:hsfau1'
Warning: Cannot open division file '<null>' for database 'twp'
Warning: seqCdQry failed
# Failed 'twp:hsfau1'
# Trying 'tsw:hsfau1'
Warning: Cannot open division file '<null>' for database 'tsw'
Warning: seqCdQry failed
# Failed 'tsw:hsfau1'
# Trying 'tgenbank:hsfau1'
Warning: Cannot open division file '<null>' for database 'tgenbank'
Warning: seqCdQry failed
# Failed 'tgenbank:hsfau1'
# Trying 'tpir:hsfau1'
Warning: Cannot open division file '<null>' for database 'tpir'

    EMBOSS An error in ajseqdb.c at line 5141:
seqCdQryOpen failed

-------------------------------------------

Haruo Suzuki

http://emboss.open-bio.org/pipermail/emboss/2006-July/002561.html

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