[EMBOSS] jemboss rebase etc can't utilize embossre.enz file

[John Marken]

Hello,
Just installed jemboss, the interface works but programs needing database files like remap don't work. Remap can return the sequence and translations but no restriction enzyme sites are shown, nor are there enzymes listed the cuts or no cut sections of the resulting file. Command line emboss is working and  remap can find the rebase (embossre.enz etc)  files as specified in the .embossrc in //usr/local/emboss/share/EMBOSS/data/REBASE.

The jemboss.properties file in
"//usr/local/jakarta-tomcat-4.1.29/webapps/axis/WEB-INF/classes/resources"
contains the line 
"embossData=/usr/local/emboss/share/EMBOSS/data/" (without quotes)

Is the jemboss.propterties file in the right place? Is there another config file that needs editing?

Regards
John Marken


Trubion Pharmaceuticals Inc.
2401 4th Ave. Suite 1050
Seattle, WA 98121
206-838-0500