Mutiple alignement of blast results

[Georg Wilhelm Otto]

Hi Jean-Christoph,

I usually do this in two steps:

First i filter and align my blast results using MSPcrunch (see 
http://www.cgr.ki.se/cgr/groups/sonnhammer/MSPcrunch.html), then i 
visualize the result using BLIXEM (see 
http://www.cgr.ki.se/cgr/groups/sonnhammer/Blixem.html).

hope that helps,

georg


On Wednesday, March 5, 2003, at 04:44  PM, Jean-Christophe AME wrote:

> Hi all,
> I am looking for a program (preferably for unix or Mac) that does a 
> multiple alignment of a blast result. There used to be Mulblast 
> (http://www.cbs.cnrs.fr/Soft_ModMol/MulBlast/MulBlast-en.html) but it 
> doesn't seem to work anymore with the last blast outputs.
>
> Does anybody have any idea on the subject. This could be a nice and 
> useful EMBOSS program.
> Thanks for any help.
> Jean-Christophe
>
>
>
> ________________________
> Jean-Christophe Amé, PhD
> U.P.R. 9003 du CNRS - Cancérogénèse et Mutagénèse Moléculaire et 
> Structurale
> École Supérieure de Biotechnologie de Strasbourg
> Pôle API
> Boulevard Sébastien-Brant
> 67400 Illkirch
> France
>
> tel.: 33 3 90 24 47 05
> Fax.: 33 3 90 24 46 86
>
> http://parplink.u-strasbg.fr
> http://www-esbs.u-strasbg.fr/centrerech/upr9003/upr9003.html
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