est2genome

David Bauer bauer at genprofile.com
Thu Mar 29 10:03:07 UTC 2001


Hi,

just an info for est2genome users.

I found est2genome having problems finding very short exons with the
default parameters.

With the folowing changes it detects also a 14bp exon correctly:

mismatch 1 -> 3
intronpenalty 40 -> 20
splicepenalty 20 -> 10
minscore 30 -> 10

David
-- 
Dr. David Bauer
GenProfile AG, Max-Delbrueck-Center, Erwin-Negelein-Haus 
Robert-Roessle-Str. 10, D-13125 Berlin, Germany
bauer at genprofile.com, Tel:49-30-94892165, FAX:49-30-94892151





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