[emboss-dev] Problems with EMBOSS seqret GenBank to GFF3

Peter Cock p.j.a.cock at googlemail.com
Thu Sep 1 15:47:53 UTC 2011


On Tue, Aug 30, 2011 at 4:48 PM, Peter Rice <pmr at ebi.ac.uk> wrote:
>
> [cut]
>
> On 08/26/2011 03:27 AM, Peter Cock wrote:
>> This is probably a good example to discuss on the GFF3
>> song-devel mailing list - small and apparently very simple
>> except for how to represent the (forward strand) join location.
>
> We could propose something for the
> http://www.sequenceontology.org/wiki/index.php/GFF3_best_practices
> page to describe how to represent EMBL/GenBank entries
> in GFF3 (after due discussion on the SONG-devel list)

That sounds like a plan :)

I'm on leave this week so I may not get to look into the details
of this until next week - but don't worry, I'll only be ignoring
you in the short term ;)

Thanks,

Peter C.



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