EMBOSS 1.12.0

[Lapointe, David]

The BoulderIO info is at

http://stein.cshl.org/software/boulder/

Also an alternative to DTD is XML Schema though that is still a work in
progress.

David

> -----Original Message-----
> From: David Martin [mailto:dmartin at gen67172.msiwtb.dundee.ac.uk]
> Sent: Thursday, April 19, 2001 5:58 AM
> To: Peter Rice
> Cc: emboss-dev at embnet.org
> Subject: Re: EMBOSS 1.12.0
> 
> 
> On Thu, 19 Apr 2001, Peter Rice wrote:
> 
> > David,
> >
> > >Then dump it to XML, use XSLT to generate the various formats.
> >
> > Is there a DTD for this? XSLT is still new to me, but I 
> guess I should
> > learn...
> 
> XSLT is a description of rules for transforming an XML 
> document into an
> arbitrary format/mess, including running external programs on 
> part of the
> data. Have a look at the XML.com or w3c.org sites for more 
> info. It looks
> quite amenable.
> 
> >
> > >If EMBOSS can generate premade powerpoint slides of the 
> output then it
> > >really is on to a winner (because scientists are lazy beasts..)
> >
> > Again, how? I guess it should be relatively easy, apart 
> from designing the
> > background image :-)
> >
> 
> If you can generate word documents then surely powerpoint is not too
> hard..
> 
> > >EMBOSS still doesn't support BoulderIO format for sequences a la
> > >primer3.
> >
> > True. Nor GFF with sequences in the header (though I am 
> just implementing
> > that one to make reading GFF files easier)
> >
> > Does anyone have the BoulderIO format description?
> >
> Lincoln Stein? have a look also at
> www.no.embnet.org/Programs/SAL/primer05.php3 for primer 0.5
> 
> ..d
> 
> 
> >
> 
> 
>