[BioSQL-l] BioSQL at BOSC 2009?

Peter biopython at maubp.freeserve.co.uk
Mon Jun 22 12:13:42 UTC 2009


On Sat, May 16, 2009 at 10:57 PM, Hilmar Lapp<hlapp at gmx.net> wrote:
>
>
> On May 16, 2009, at 5:23 PM, Peter wrote:
>
>> I will be staying for all of ISMB
>
> I am too. Should we doodle something once the program is out?
>
>        -hilmar

Hi again,

Well the program is out. When would be a good time to
get together at BOSC/ISMB 2009 to talk about BioSQL?

As I mentioned earlier, I am there for all of ISMB but Brad
Chapman (another Biopython developer and BioSQL user)
will only be at BOSC itself, the Friday before, and the Monday
afterwards (day one of ISMB).

We have Biopython BoF sessions planned for both days of
BOSC (one more of a tutorial, one more of a hackathon) but
as we should have several Biopython coders present, Brad
and I could try and split our time with a BioSQL BoF session
at BOSC (on either the Saturday or the Sunday).

I have already started a list of possible topics - some of which
have come up on the Biopython mailing lists.

One idea was to look into using BioSQL on SQLite, which would
require a new schema. One reason this is appealing for Biopython
is SQLite is included with Python 2.5+, so this could make getting
started with BioSQL easier.

Peter




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