[BioSQL-l] Location with lt, gt

Richard Holland holland at eaglegenomics.com
Fri Oct 10 09:46:12 UTC 2008


BioJava refers to the < and > notation as fuzzy locations. See:

http://www.biojava.org/wiki/BioJava:BioJavaXDocs#Working_with_RichLocation_objects.

cheers,
Richard

2008/10/10 Raoul Jean Pierre Bonnal <raoul.bonnal at itb.cnr.it>:
> Dear all,
> how do you store this kind of location ?
> ------------------------------------
>     CDS             <1..>314
> ------------------------------------
>
>                     /codon_start=1
>                     /db_xref="SPTREMBL:Q9QYG8"
>                     /transl_table=1
>                     /gene="uk"
>                     /product="uridine kinase"
>                     /protein_id="BAA83085.1"
>                     /translation="KLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEE
>
> FCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGLSKRQTNGYLNGYTPSRKRQA
>                     SES"
>
>
> --
> Ra
>
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-- 
Richard Holland, BSc MBCS
Finance Director, Eagle Genomics Ltd
M: +44 7500 438846 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/



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